Starving Pathogens: Targeting Heme Acquisition

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Bacterial pathogens survive in the human host by circumventing one of our most powerful defenses: iron sequestration. Our lab studies how these microbes hijack heme from hemoglobin—a process essential for their survival and virulence. By combining structural biology, biophysics, proteomics, and protein engineering, we aim to uncover the molecular mechanisms of heme capture and identify new ways to block this process to fight infectious disease.

 

Our recent studies highlight the remarkable strategies of Gram-positive pathogens such as Corynebacterium diphtheriae, Streptococcus pyogenes, and Staphylococcus aureus in scavenging heme from hemoglobin. Each pathogen has evolved unique molecular approaches, exploiting subtle differences in receptor dynamics and globin stability to extract heme either passively or actively at the microbial surface. These findings reveal how a single host protein can be exploited in strikingly different ways, underscoring the complexity and diversity of host-pathogen interactions.

Currently, our lab is exploring heme trafficking as a dynamic process on the bacterial cell surface. By integrating static structural snapshots with kinetic and spectroscopic techniques, we aim to capture fleeting intermediates that define the flow of heme from hemoglobin to the pathogen. As part of these studies, we are developing fluorescent reporters that allow real-time tracking of heme transfer under physiologically relevant conditions.

Ultimately, we aim to turn our molecular insights into therapies that block bacterial heme capture. By targeting these essential pathways, we hope to develop treatments that starve pathogens of the nutrients they need to survive,  offering a new approach against antibiotic-resistant infections.

 

 

Some of our more recent work:

Ford J, Goring AK, Lee Y, Chen M, Mahoney BJ, Sawaya MR, Shafaat HS, Loo JA and Clubb RT. Structural Basis of Heme Scavenging by the ChtA and HtaA Hemophores in Corynebacterium diphtheriae. Journal of Biological Chemistry 301 2025; 110663

Mahoney BJ, Lyman LR, Ford J, Soule J, Cheung NA, Goring AK, Ellis-Guardiola K, Collazo M, Cascio D, Ton-That H, Schmitt MP, and Clubb RT. Molecular basis of hemoglobin capture by Corynebacterium diphtheriae. Proceedings of the National Academy of Sciences (USA). 122 2025; e2411833122.

Goring AK, Hale S, Dasika P, Chen Y, Clubb RT and Loo JA The exoproteome and surfaceome of toxigenic Corynebacterium diphtheriae 1737 and its response to iron-restriction and growth on human hemoglobin. Journal of Proteome Research 24 2025; 77-93.

Mahoney BJ, Goring AK, Wang Y, Dasika P, Zhou A, Grossbard E, Cascio D, Loo JA and Clubb RT. Development and atomic structure of a new fluorescence-based sensor to probe heme transfer in bacterial pathogens. Journal of Inorganic Biochemistry 2023 249; 112369

Macdonald R, Mahoney BJ, Soule J, Goring A, Ford J, Loo JA, Cascio D and Clubb RT. The Shr receptor from Streptococcus pyogenes uses a 'cap and release' mechanism to acquire heme-iron from human hemoglobin. Proceedings of the National Academy of Sciences (USA) 120(5) 2023; e2211939120

Clayton J, Ellis-Guardiola K, Mahoney B, Soule J, Liu W, Clubb RT and Wereszczynski J. Directed inter-domain motions enable the IsdH Staphylococcus aureus receptor to rapidly extract heme from human hemoglobin. Journal of Molecular Biology 2022 434 2022; 167623.