How Pathogenic Bacteria Build Pili

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The Clubb Lab uses multidisciplinary approaches to uncover how Gram-positive bacterial pathogens build pili and other surface structures that allow them to attach to tissues, form biofilms, and evade immune defenses. This research provides insight into bacterial virulence and lays the groundwork for developing therapies to combat antibiotic-resistant infections.

 

A central focus of our research is pili—hair-like protein filaments that act like grappling hooks, enabling bacterial pathogens to attach to host cells, abiotic surfaces, and other microbes. Pili in Gram-positive bacteria are built with remarkable precision by specialized enzymes that select and link the appropriate pilin proteins in a specific order. Some pilins can also form shorter pili or crosslinked dimers, creating a variety of surface structures that strengthen attachment and help pathogens adapt to different environments. These structures are critical for the survival and virulence of many pathogens, including E. faecium, S. pneumoniae, and C. diphtheriae.

By combining cryo-EM, high-throughput assembly assays, and computational modeling, we are uncovering the molecular mechanisms that guide pilus assembly. Understanding these processes provides a blueprint for how pathogens display critical virulence factors and lays the foundation for novel therapeutics that could disarm antibiotic-resistant pathogens by targeting their pili.

 

 

Relevant publications:

Cheung NA, Song M, Sue CK and Clubb RT. Quantifying the kinetics of pilus-specific sortase-catalyzed crosslinking using high-performance liquid chromatography. Methods in Molecular Biology 2024 2727; 135-143.

Sue CK, Cheung N, Mahoney BJ, McConnell SA, Scully JM, Fu JY, Chang C, Ton-That H, Loo JA and Clubb RT. The basal and major pilins in the Corynebacterium diphtheriae SpaA pilus adopt similar structures that competitively react with the pilin polymerase. Biopolymers (in press)

Martinez OE, Mahoney BJ, Goring AK, Yi SW, Tran DP, Cascio D, Phillips ML, Muthana MM, Chen X, Jung ME, Loo JA and Clubb RT. Insight into the molecular basis of substrate recognition by the wall teichoic acid glycosyltransferase TagA. Journal of Biological Chemistry 298 2022; 101464.

McConnell SA, McAllister RA, Amer BR, Mahoney B, Sue CK, Chang C, Ton-That H. and Clubb RT. Sortase-assembled pili in Corynebacterium diphtheriae are built using a latch mechanism. Proceedings of the National Academy of Sciences (USA) 118 2021; e2019649118

Sue CK, McConnell SA, Ellis-Guardiola K, Muroski JM, McAllister RA, Yu J, Alvarez AI, Chang C, Ogorzalek Loo RR, Loo JA, Ton-That H. and Clubb RT. Kinetics and optimization of the lysine-isopeptide bond forming activity of the pilus-specific sortase from Corynebacterium diphtheriae. Bioconjugation Chemistry 31 2020; 1624-1634.

Gosschalk JE, Wu C, Sue CK, Kattke MD, Yi SW, Damoiseaux R, Jung ME, Ton-That H and Clubb RT. A cell-based screen in Actinomyces oris to identify sortase inhibitors. Scientific Reports 10 2020; 85202.

Chang C, Wu C, Osipiuk J, Siegel SD, Zhu S, Liu X, Joachimiak A, Clubb RT, Das A and Ton-That H. Cell-to-cell interaction requires optimal positioning of a pilus tip adhesin modulated by gram-positive transpeptidase enzymes. Proceedings of the National Academy of Sciences (USA) 116 2019; 18041-18049

Jacobitz AW, Kattke MD, Wereszczynski J, Clubb RT. Sortase Transpeptidases: Structural Biology and Catalytic Mechanism. Adv Protein Chem Struct Biol. 2017;109. doi:10.1016/bs.apcsb.2017.04.008.

Kattke MD, Chan AH, Duong A, et al. Crystal Structure of the Streptomyces coelicolor Sortase E1 Transpeptidase Provides Insight into the Binding Mode of the Novel Class E Sorting Signal. Ton-That H, ed. PLoS ONE. 2016;11(12):e0167763. doi:10.1371/journal.pone.0167763.

Jacobitz AW, Naziga EB, Yi SW, et al. The “Lid” in the Streptococcus Pneumoniae SrtC1 Sortase Adopts a Rigid Structure that Regulates Substrate Access to the Active Site. The journal of physical chemistry B. 2016;120(33):8302-8312. doi:10.1021/acs.jpcb.6b01930.

Chan A, Yi SW, Terwilliger AL, Maresso AW, Jung ME and Clubb RT. Structure of the Bacillus anthracis sortase A enzyme bound to its sorting signal: a flexible amino-terminal appendage modulates substrate access. J Biol Chem. 2015 Oct 16;290(42):25461-74. 

Jacobitz AW, Wereszczynski J, Yi SW, Amer BR, Huang GL, Nguyen AV, Sawaya MR, Jung ME, McCammon JA, Clubb RT. Structural and computational studies of the Staphylococcus aureus Sortase B-substrate complex reveal a substrate-stabilized oxyanion hole. J Biol Chem. 2014 Feb 11. [Epub ahead of print]

Robson, S. A., Jacobitz, A. W., Phillips, M. L. & Clubb, R. T. Solution Structure of the Sortase Required for Efficient Production of Infectious Bacillus anthracis Spores. Biochemistry 51 2012; 7953–7963.

Spirig T, Weiner EM, and Clubb RT. Sortase enzymes in Gram-positive bacteria. Molecular Microbiology 82 2011; 1044-59.